PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_25297_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 496aa    MW: 55724.1 Da    PI: 5.1972
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_25297_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.91.8e-34261162101
                                 HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS
                HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 
                                 Fl k+y++++d+++++++sws+n++sfvv+++ +fa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF+++
  Cotton_A_25297_BGI-A2_v1.0  26 FLIKTYDMVDDSSTDDIVSWSSNKKSFVVWNPPDFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANE 99 
                                 9****************************************************************999.........****** PP

                                 XXXXXXXXXXXXXXXXX CS
                HSF_DNA-bind  85 sFkkgkkellekikrkk 101
                                  F k++++ll++i+r+k
  Cotton_A_25297_BGI-A2_v1.0 100 DFVKDQRHLLKTIHRRK 116
                                 ***************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.9E-3722115IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.8E-3522115IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.2E-6022115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.6E-192649IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.3E-3026115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.6E-196476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.6E-197789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MDPTAPSASV VGGGGGGGGG GGPAPFLIKT YDMVDDSSTD DIVSWSSNKK SFVVWNPPDF  60
ARLLLPTYFK HNNFSSFIRQ LNTYGFRKID PERWEFANED FVKDQRHLLK TIHRRKPIHS  120
HSNPQGSLID HERAGYEEEI EKLSREKAAL EADVLRSEQE RSSLKHQVEE LTQQADQMER  180
RQETLFNFLE KALQDPAFAE HLFRRIESMD DVAAYNKKRR LPQIDQTKPV GDHSILDNKS  240
CSTPEFGNVV HLDFSNKLRL ELSSAVSEIN LVSQSTQSSN EGEESPQRRV SQGEPKDDNI  300
RPQGLLFTPE TLDISDTGTS FTFNMDSSFS QRVSMNESPA LHSLQQRLSS SEEPDSHISC  360
QLNLTLASSS LQVNKSPSLT RMSQPSWEIG KVSESRSNAN SKDSDSRPFH SRRNMIDGET  420
TLSSSKDGPN TNQEPTAAPV RVNDVFWEQF LTERPGSSDN EEASSNYRAN PYEDQDDKRS  480
GHGLARNTKN IEQLSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-201711517129Heat shock factor protein 1
5d5v_B4e-201711517129Heat shock factor protein 1
5d5v_D4e-201711517129Heat shock factor protein 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7486160.0KJ748616.1 Gossypium hirsutum HSF13 (HSF13) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012481655.10.0PREDICTED: heat stress transcription factor A-5-like isoform X1
SwissprotQ94BZ51e-170HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLA0A075QPU50.0A0A075QPU5_G
STRINGPOPTR_0001s32810.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101342433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-172HSF family protein